Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa.
Identifieur interne : 003B77 ( Main/Exploration ); précédent : 003B76; suivant : 003B78Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa.
Auteurs : Udaya C. Kalluri [États-Unis] ; Stephen P. Difazio ; Amy M. Brunner ; Gerald A. TuskanSource :
- BMC plant biology [ 1471-2229 ] ; 2007.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Analyse par réseau de protéines (MeSH), Arabidopsis (génétique), Facteurs d'ADP-ribosylation (génétique), Facteurs de transcription (génétique), Famille multigénique (génétique), Gènes de plante (génétique), Génome végétal (génétique), Phylogenèse (MeSH), Populus (génétique), Protéines de liaison à l'ADN (génétique), Protéines nucléaires (génétique).
- MESH :
English descriptors
- KwdEn :
- ADP-Ribosylation Factors (genetics), Arabidopsis (genetics), DNA-Binding Proteins (genetics), Gene Expression Profiling (MeSH), Genes, Plant (genetics), Genome, Plant (genetics), Multigene Family (genetics), Nuclear Proteins (genetics), Phylogeny (MeSH), Populus (genetics), Protein Array Analysis (MeSH), Transcription Factors (genetics).
- MESH :
- chemical , genetics : ADP-Ribosylation Factors, DNA-Binding Proteins, Nuclear Proteins, Transcription Factors.
- genetics : Arabidopsis, Genes, Plant, Genome, Plant, Multigene Family, Populus.
- Gene Expression Profiling, Phylogeny, Protein Array Analysis.
Abstract
BACKGROUND
Auxin/Indole-3-Acetic Acid (Aux/IAA) and Auxin Response Factor (ARF) transcription factors are key regulators of auxin responses in plants. We identified the suites of genes in the two gene families in Populus and performed comparative genomic analysis with Arabidopsis and rice.
RESULTS
A total of 35 Aux/IAA and 39 ARF genes were identified in the Populus genome. Comparative phylogenetic analysis revealed that several Aux/IAA and ARF subgroups have differentially expanded or contracted between the two dicotyledonous plants. Activator ARF genes were found to be two fold-overrepresented in the Populus genome. PoptrIAA and PoptrARF gene families appear to have expanded due to high segmental and low tandem duplication events. Furthermore, expression studies showed that genes in the expanded PoptrIAA3 subgroup display differential expression.
CONCLUSION
The present study examines the extent of conservation and divergence in the structure and evolution of Populus Aux/IAA and ARF gene families with respect to Arabidopsis and rice. The gene-family analysis reported here will be useful in conducting future functional genomics studies to understand how the molecular roles of these large gene families translate into a diversity of biologically meaningful auxin effects.
DOI: 10.1186/1471-2229-7-59
PubMed: 17986329
PubMed Central: PMC2174922
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Difazio</name></author><author><name sortKey="Brunner, Amy M" sort="Brunner, Amy M" uniqKey="Brunner A" first="Amy M" last="Brunner">Amy M. Brunner</name></author><author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. 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Tuskan</name></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2007" type="published">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>ADP-Ribosylation Factors (genetics)</term><term>Arabidopsis (genetics)</term><term>DNA-Binding Proteins (genetics)</term><term>Gene Expression Profiling (MeSH)</term><term>Genes, Plant (genetics)</term><term>Genome, Plant (genetics)</term><term>Multigene Family (genetics)</term><term>Nuclear Proteins (genetics)</term><term>Phylogeny (MeSH)</term><term>Populus (genetics)</term><term>Protein Array Analysis (MeSH)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Analyse par réseau de protéines (MeSH)</term><term>Arabidopsis (génétique)</term><term>Facteurs d'ADP-ribosylation (génétique)</term><term>Facteurs de transcription (génétique)</term><term>Famille multigénique (génétique)</term><term>Gènes de plante (génétique)</term><term>Génome végétal (génétique)</term><term>Phylogenèse (MeSH)</term><term>Populus (génétique)</term><term>Protéines de liaison à l'ADN (génétique)</term><term>Protéines nucléaires (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>ADP-Ribosylation Factors</term><term>DNA-Binding Proteins</term><term>Nuclear Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Genes, Plant</term><term>Genome, Plant</term><term>Multigene Family</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Facteurs d'ADP-ribosylation</term><term>Facteurs de transcription</term><term>Famille multigénique</term><term>Gènes de plante</term><term>Génome végétal</term><term>Populus</term><term>Protéines de liaison à l'ADN</term><term>Protéines nucléaires</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Phylogeny</term><term>Protein Array Analysis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Analyse par réseau de protéines</term><term>Phylogenèse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Auxin/Indole-3-Acetic Acid (Aux/IAA) and Auxin Response Factor (ARF) transcription factors are key regulators of auxin responses in plants. We identified the suites of genes in the two gene families in Populus and performed comparative genomic analysis with Arabidopsis and rice.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>A total of 35 Aux/IAA and 39 ARF genes were identified in the Populus genome. Comparative phylogenetic analysis revealed that several Aux/IAA and ARF subgroups have differentially expanded or contracted between the two dicotyledonous plants. Activator ARF genes were found to be two fold-overrepresented in the Populus genome. PoptrIAA and PoptrARF gene families appear to have expanded due to high segmental and low tandem duplication events. Furthermore, expression studies showed that genes in the expanded PoptrIAA3 subgroup display differential expression.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>The present study examines the extent of conservation and divergence in the structure and evolution of Populus Aux/IAA and ARF gene families with respect to Arabidopsis and rice. The gene-family analysis reported here will be useful in conducting future functional genomics studies to understand how the molecular roles of these large gene families translate into a diversity of biologically meaningful auxin effects.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17986329</PMID><DateCompleted><Year>2008</Year><Month>02</Month><Day>04</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><PubDate><Year>2007</Year><Month>Nov</Month><Day>06</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa.</ArticleTitle><Pagination><MedlinePgn>59</MedlinePgn></Pagination><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Auxin/Indole-3-Acetic Acid (Aux/IAA) and Auxin Response Factor (ARF) transcription factors are key regulators of auxin responses in plants. We identified the suites of genes in the two gene families in Populus and performed comparative genomic analysis with Arabidopsis and rice.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">A total of 35 Aux/IAA and 39 ARF genes were identified in the Populus genome. Comparative phylogenetic analysis revealed that several Aux/IAA and ARF subgroups have differentially expanded or contracted between the two dicotyledonous plants. Activator ARF genes were found to be two fold-overrepresented in the Populus genome. PoptrIAA and PoptrARF gene families appear to have expanded due to high segmental and low tandem duplication events. Furthermore, expression studies showed that genes in the expanded PoptrIAA3 subgroup display differential expression.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">The present study examines the extent of conservation and divergence in the structure and evolution of Populus Aux/IAA and ARF gene families with respect to Arabidopsis and rice. 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Brunner</name><name sortKey="Difazio, Stephen P" sort="Difazio, Stephen P" uniqKey="Difazio S" first="Stephen P" last="Difazio">Stephen P. Difazio</name><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name></noCountry><country name="États-Unis"><region name="Tennessee"><name sortKey="Kalluri, Udaya C" sort="Kalluri, Udaya C" uniqKey="Kalluri U" first="Udaya C" last="Kalluri">Udaya C. Kalluri</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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